github.com/MRtrix3/mrtrix3 ↗
MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density
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Contributors
41
Lines of Code
37,532
From
2009-07-23
To
2020-12-12
About MRtrix3/mrtrix3
MRtrix3 is a comprehensive software toolkit written in C++ for advanced diffusion magnetic resonance imaging (dMRI) analysis. The project provides command-line and graphical user interface tools that enable neuroscientists and medical researchers to process and analyze complex neuroimaging data, with specific capabilities in constrained spherical deconvolution, probabilistic tractography, track-density imaging, and apparent fiber density measurement.
The software is designed for flexibility in deployment and can be installed through direct platform-specific downloads, compiled from source code in this repository, or run via containerization technologies like Docker or Singularity. Installation requires standard development tools including a C++11-compatible compiler, Python, and libraries such as Eigen, zlib, OpenGL, and Qt. The project maintains comprehensive online documentation and hosts an active community forum where users can ask questions and discuss usage.
MRtrix3 targets neuroimaging researchers and clinical practitioners who need specialized tools for diffusion MRI processing and analysis. The project emphasizes accessibility through multiple installation methods and extensive documentation, while maintaining an active development cycle that users can keep current through simple git pull and rebuild commands.